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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaacctgtgatgtaaccgatcgtgttggttgatgttgttttgacattgctttgtttgacaaaactcatgtcatgttataccgttctcgtgcctgcattgtagGAAATTGTACAGAAGACCCCAATAAGAGTACTTCATCGTAGAAGCCCCTTAGAGCGGAAGCGCATCATACACTGGTGATCCCCAATTTATATAATCCTTT

Basic information

species Zea mays
transcript GRMZM2G101383_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101383_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g47380.1 (Oryza sativa), 3'ss of exon 11
gtatgaaaacctgtgatgtaaccgatcgtgttggttgatgttgttttgacattgctttgtttgacaaaactcatgtcatgtta-taccgtt-ctcgtgcctgcattgtagGAAATTGTACAGAAGACCCCAATAAGAGTACTTCATCGTAGAAGCCCCTTAGAGCGGAAGCGCATCATACACTGGTGATCCCCAATTTATATAATCCTTT
      |    ||     || |  |    | |  ||||| || | ||  | ||| | |  |     |     ||   |||| |  |  ||  ||| ||| |||  |||||||||||||||| ||||| |||||||||||  | ||||||||||| || |||||| | || || || ||||||||                          
------aggtttggatcttagctaa----ggtcattgattttctattttctttgttgttctaaggtatttggatactatgtgaacatagtaactcttgcttgctgtgtagGAAATTGTACAAAAGACGCCAATAAGAGTCTTACATCGTAGAAGTCCATTAGAGAGAAAACGGATTATACACTG--------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgtttgacaaaactcatgtcatgttataccgttctcgtgcctgcattgtagGAAATTGTACAGAAGACCCCAATAAGAGTACTTCATCGTAGAAGCCCCTTAGAGCGGAAGCGCATCATACACTGGTGATCCCCAATTTATATAATCCTTT
     gtttgac  putative branch site (score: 4)
                        atgttata  TA-rich tract