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...tgtaaaatgttgaaatgctagtccacaagttagggttttccctctcttttccgagtggacaaggcagataatcctgtgcattttttttatttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGATAAGGGAAGCAGCTGGTTTGTTCCGGCTACTCAAGTCGTTGGAGTGAAA
species | Zea mays |
transcript | GRMZM2G098815_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTAGTTTGTGNNNNNNNGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|211480513|gb|FL444430.1|FL444430
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|166427245|gb|EG305269.1|EG305269
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: TCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|60342225|gb|DN209198.1|DN209198
genomic: TCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|149005335|gb|EE039886.2|EE039886
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|71433708|gb|DR814758.1|DR814758
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|71759264|gb|DR957201.1|DR957201
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|76014272|gb|DT941442.1|DT941442
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|110944532|gb|EE164689.1|EE164689
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|84969904|gb|DW468307.1|DW468307
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|149082608|gb|EE171807.2|EE171807
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|78117670|gb|DV536057.1|DV536057
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGNNNNNNNGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|148952744|gb|EC898725.2|EC898725
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|86472031|gb|DY238401.1|DY238401
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|60336775|gb|DN203748.1|DN203748
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGAEST: gi|78022525|gb|DV490912.1|DV490912
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
EST: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG TTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
genomic: ACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagtcact ... ttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGA
cttttccgagtggacaaggcagataatcctgtgcattttttttatttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGATAAGGGAAGCAGCTGGTTTGTTCCGGCTACTCAAGTCGTTGGAGTGAAA
cattttttttattt CT-rich tract
tgcattttttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaaatgttgaaatgctagtccacaagttagggttttccctctcttttccgagtggacaaggcagataatcctgtgcattttttttatttgggtgcagTTCAAGACCTTTTCATCGAGGTACAAGCGTTCTGTATTGAATTTTCACGGATAAGGGAAGCAGCTGGTTTGTTCCGGCTACTCAAGTCGTTGGAGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG