Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatatactttgtggacaatcgtacatctgtatttgttccataaaattgtctgcataaatatatctatctaatgatctcccttttaggtttttcctcatgtagCAACTGGATTTTCCGATACTGATGGTACTATCCGTGAACTGACATTAAAGTCAATGCTCATATTAGCACCAAAA

Basic information

species Zea mays
transcript GRMZM2G098078_T04
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908674|gb|CF013487.1|CF013487
EST:     ACATAGATCAGTTTGGGGAATCAATGTCTGCTCAAACTGTTGATGAACAA                         CAACTGGATTCTCCGATACTGATGGTACTATCCGTGAACTGACATTAAAGT
genomic: ACATAGATCAGTTTGGGGAATCAATGTCTGCTCAAACTGTTGATGAACAAgtatgtgata ... cctcatgtagCAACTGGATTTTCCGATACTGATGGTACTATCCGTGAACTGACATTAAAGT
EST: gi|32908842|gb|CF013655.1|CF013655
EST:     ACATAGATCAGTTTGGGGAATCAATGTCTGCTCAAACTGTTGATGAACAA                         CAACTGGATTCTCCGATACTGATGGTACTATCCGTGAACTGACATTAAAGT
genomic: ACATAGATCAGTTTGGGGAATCAATGTCTGCTCAAACTGTTGATGAACAAgtatgtgata ... cctcatgtagCAACTGGATTTTCCGATACTGATGGTACTATCCGTGAACTGACATTAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgcataaatatatctatctaatgatctcccttttaggtttttcctcatgtagCAACTGGATTTTCCGATACTGATGGTACTATCCGTGAACTGACATTAAAGTCAATGCTCATATTAGCACCAAAA
                  atctaat  putative branch site (score: 3)
                           tctcccttttaggttt  putative PPT
      ataaatatatctatct  TA-rich tract