1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatgtctcaacgctatgttccttgcttgcttgagcaatgttttagttatggttgaaaaagacatcatcttttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACACACCACGTGGAGCACCGAAG
species | Zea mays |
transcript | GRMZM2G097277_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATAGGCCAACTATTTCGGCATCCAACCCTGCCGATCTTTATGATGTTCAT GTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACEST: gi|211168064|gb|FL062250.1|FL062250
genomic: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCATgtaatgtctc ... tttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAAC
EST: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCAT GTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACEST: gi|67026679|gb|CO455428.1|CO455428
genomic: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCATgtaatgtctc ... tttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAAC
EST: ATAGGCCAACTATTTCGGCATCCAACCCTGCCGATCTTTATGATGTTCAT GTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACEST: gi|71757747|gb|DR955684.1|DR955684
genomic: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCATgtaatgtctc ... tttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAAC
EST: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCAT GTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACEST: gi|5895641|gb|AW036887.1|AW036887
genomic: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCATgtaatgtctc ... tttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAAC
EST: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCAT GTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACEST: gi|67042721|gb|CO468976.1|CO468976
genomic: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCATgtaatgtctc ... tttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAAC
EST: ATAGGCCAACTATTTCGGCATCCAACCCTGCCGATCTTTATGATGTTCAT GTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTANGTATGTT-GACAA
genomic: ATAGGCCAACTATTTCGCCATCCAACCCTGCCGATCTTTATGATGTTCATgtaatgtctc ... tttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTA-GTATGTTTGACAA
cttgcttgagcaatgttttagttatggttgaaaaagacatcatcttttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACACACCACGTGGAGCACCGAAG
tcatctttt CT-rich tract
aatgttttagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtctcaacgctatgttccttgcttgcttgagcaatgttttagttatggttgaaaaagacatcatcttttgctgcagGTCTACACCTCTTCGACTAATATGTTTTCAAAAGCTAGTATGTTTGACAACACACCACGTGGAGCACCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA