1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgtttcttaactctgatcatgtgtagtacactaataaacaagtaccgaccttaggatttaggaggtgataataatgtgtgccttatgaagaatatcttgcttctattgtcattattaatgtatgttatcatcagtgcatttttaaacagttctcctaagatgtgaacatgcctatatcttcatgcccctttgttagATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCAAAACATTCGCCCAAGTCTGGAGAAATTCTCTGCAAACACAAGGATAAAG
species | Zea mays |
transcript | GRMZM2G096389_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TAACGAAGCGATTGATAGAGTTCGAAAATACAGATTCTGGCAGCTTAACA ATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCAEST: gi|211023732|gb|FL449221.1|FL449221
genomic: TAACGAAGCGATTGATAGAGTTCGAAAATACAGATTCTGGCAGCTTAACAgtatgtttct ... cctttgttagATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCA
EST: TAACGAAGCGATTGATAGAGTTCGAAAATACAGATTCTGGCAGCTTAACA ATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCAEST: gi|211122767|gb|FL444236.1|FL444236
genomic: TAACGAAGCGATTGATAGAGTTCGAAAATACAGATTCTGGCAGCTTAACAgtatgtttct ... cctttgttagATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCA
EST: TAACGAAGCGATTGATAGAGTTCGAAAATACAGATTCTGGCAGCTTAACA ATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCA
genomic: TAACGAAGCGATTGATAGAGTTCGAAAATACAGATTCTGGCAGCTTAACAgtatgtttct ... cctttgttagATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCA
ttaaacagttctcctaagatgtgaacatgcctatatcttcatgcccctttgttagATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCAAAACATTCGCCCAAGTCTGGAGAAATTCTCTGCAAACACAAGGATAAAG
tcttcatgccccttt CT-rich tract
tatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcttaactctgatcatgtgtagtacactaataaacaagtaccgaccttaggatttaggaggtgataataatgtgtgccttatgaagaatatcttgcttctattgtcattattaatgtatgttatcatcagtgcatttttaaacagttctcctaagatgtgaacatgcctatatcttcatgcccctttgttagATTGAAGAATTTCTGGCAACAGCTGATGAATCTAATGAAGAGCCTGTTTCAAAACATTCGCCCAAGTCTGGAGAAATTCTCTGCAAACACAAGGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA