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gtgatgttaatttcagaagtagaggctggataactgtaatcaactttcttcacattttctataaatacttacctatcactagttttgaaatgccttttatccccccccccctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTCAATGGTGGCATATGGTTCCG
species | Zea mays |
transcript | GRMZM2G096343_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAG GTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTCEST: gi|76282121|gb|DV021689.1|DV021689
genomic: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAGgtgatgttaa ... ctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTC
EST: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAG GTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTCEST: gi|67041082|gb|CO467337.1|CO467337
genomic: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAGgtgatgttaa ... ctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTC
EST: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAG GTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTCEST: gi|71422113|gb|DR805618.1|DR805618
genomic: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAGgtgatgttaa ... ctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTC
EST: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAG GTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAGgtgatgttaa ... ctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTC
tacttacctatcactagttttgaaatgccttttatccccccccccctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTCAATGGTGGCATATGGTTCCG
tacttac putative branch site (score: 140)
tgccttttatcccccc putative PPT
ttttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgttaatttcagaagtagaggctggataactgtaatcaactttcttcacattttctataaatacttacctatcactagttttgaaatgccttttatccccccccccctctctctagGTATGATTGGGCTGCCAAGAAGACCTTGCAATCTGGCTACTTTTTGTGGTCAATGGTGGCATATGGTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG