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gtaagataacttcgtaccaatctgagaattttccactggttattagtaactagaaataacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttccataagtcatattttaatcgatgtgaatacgtgattaatggatctgccaatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCAGAGTGATTTTTTTATTATA
species | Zea mays |
transcript | GRMZM2G095969_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGEST: gi|78179334|gb|DV549707.1|DV549707
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCGTCTGCTAATGCGCAGCTTGAGAGEST: gi|149089637|gb|EE178891.2|EE178891
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGEST: gi|76021691|gb|DT948861.1|DT948861
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGEST: gi|60341449|gb|DN208422.1|DN208422
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGEST: gi|78074889|gb|DV503323.1|DV503323
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGEST: gi|211280306|gb|FL480836.1|FL480836
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAAGATCTTGACGCGTCTGCTAATGCGCAGCTTGAGAG
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAG
aagtcatattttaatcgatgtgaatacgtgattaatggatctgccaatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCAGAGTGATTTTTTTATTATA
gattaat putative branch site (score: 34)
atattttaatcgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataacttcgtaccaatctgagaattttccactggttattagtaactagaaataacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttccataagtcatattttaatcgatgtgaatacgtgattaatggatctgccaatcttgcagGCTCTTCTTTCCTCAAGATCTTGACGCTTCTGCTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCAGAGTGATTTTTTTATTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT