1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggaatcaacgagttaatttatactagtgcaaccaagtgttgccattagtaattatgacaaatcttttctgaaataatttttgtttgataattgctttcagCAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGCATTGTAGAGCTCCTGATCTGCATCAAGTTTGGGCATG
species | Zea mays |
transcript | GRMZM2G095757_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTAATCGCGATACCGACCATCCGGGAGTACAATACCTACTTGCAAGACAG CAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGEST: gi|71442511|gb|DR823561.1|DR823561
genomic: TTAATCGCGATACCGACCATCCGGGAGTACAATACCTACTTGCAAGACAGgtataatttt ... ttgctttcagCAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATG
EST: TTAATCGCGATACCGACCATCCGGGAGTACAATACCTACTTGCAAGACAG CAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGEST: gi|166606811|gb|EG096625.1|EG096625
genomic: TTAATCGCGATACCGACCATCCGGGAGTACAATACCTACTTGCAAGACAGgtataatttt ... ttgctttcagCAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATG
EST: TTAATCGCGATACCAACCATCCGCGAGTACAATACCTACTTGCAAGACAG CAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATA
genomic: TTAATCGCGATACCGACCATCCGGGAGTACAATACCTACTTGCAAGACAGgtataatttt ... ttgctttcagCAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATA
tagtaattatgacaaatcttttctgaaataatttttgtttgataattgctttcagCAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGCATTGTAGAGCTCCTGATCTGCATCAAGTTTGGGCATG
gtttgat putative branch site (score: 16)
ttgctttc putative PPT
aaatcttttctgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaatcaacgagttaatttatactagtgcaaccaagtgttgccattagtaattatgacaaatcttttctgaaataatttttgtttgataattgctttcagCAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGCATTGTAGAGCTCCTGATCTGCATCAAGTTTGGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- aatcaac
- - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg