1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtacagtagtgcgcgcggccgtcgtcctcgcggcggcatgggcgaatcggtcggtcgtcatgcgagcgctcgggcgcccttcactgactcgggtgcccttcttctatcttgtctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGCCGCACTCGTGCAGGATGCTCGTCCTCAAGCCCAGGATCCAGATCCAGT
species | Zea mays |
transcript | GRMZM2G095126_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGEST: gi|71323535|gb|DR798428.1|DR798428
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTTGACGTCGCGEST: gi|161580098|gb|EY955473.1|EY955473
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: CGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGEST: gi|88753305|gb|DY537446.1|DY537446
genomic: CGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGEST: gi|94473544|gb|EB702502.1|EB702502
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTTGACGTCGCGEST: gi|148929477|gb|EC875592.2|EC875592
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTTGACGTCGCGEST: gi|5740192|gb|AI947882.1|AI947882
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGEST: gi|149080680|gb|EE169738.2|EE169738
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGEST: gi|71767715|gb|DR965652.1|DR965652
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
cgctcgggcgcccttcactgactcgggtgcccttcttctatcttgtctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGCCGCACTCGTGCAGGATGCTCGTCCTCAAGCCCAGGATCCAGATCCAGT
cactgac putative branch site (score: 11)
cccttcttctatcttg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacagtagtgcgcgcggccgtcgtcctcgcggcggcatgggcgaatcggtcggtcgtcatgcgagcgctcgggcgcccttcactgactcgggtgcccttcttctatcttgtctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCGCCGCACTCGTGCAGGATGCTCGTCCTCAAGCCCAGGATCCAGATCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG