1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatggaataaacattgcatcttttatcattgacatgtaactgagggtttccttatccatatgaatctcattttgacatgtgacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGGAGATACCAGTGGGCAATTTGACCCGCAAGTTTCTAGAAGATGGAGATG
species | Zea mays |
transcript | GRMZM2G093359_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGEST: gi|78180016|gb|DV550389.1|DV550389
genomic: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaata ... gacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAAEST: gi|5740120|gb|AI947810.1|AI947810
genomic: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaata ... gacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
EST: CCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGEST: gi|149008950|gb|EE153723.2|EE153723
genomic: CCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaata ... gacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGEST: gi|149090119|gb|EE179417.2|EE179417
genomic: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaata ... gacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGEST: gi|148983249|gb|EE029216.2|EE029216
genomic: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaata ... gacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGCCCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
genomic: GCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaata ... gacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAG
gtaactgagggtttccttatccatatgaatctcattttgacatgtgacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGGAGATACCAGTGGGCAATTTGACCCGCAAGTTTCTAGAAGATGGAGATG
ttttgac putative branch site (score: 3)
atatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaataaacattgcatcttttatcattgacatgtaactgagggtttccttatccatatgaatctcattttgacatgtgacatttcagGAACCGGACTCCCTCGGATGTCTATTGGAGCTAACATGGAACGGGCAGAAGGAGATACCAGTGGGCAATTTGACCCGCAAGTTTCTAGAAGATGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG