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gtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAAGGAAACAG
species | Zea mays |
transcript | GRMZM2G092776_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATTAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTTAGGGACTGCEST: gi|84976568|gb|DW474990.1|DW474990
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATAAGGCACCGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAG-GAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC
atctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAAGGAAACAG
tatcctctc CT-rich tract
ttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAAGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA