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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttctctctctctctctctctctctctctctctctctctctctctcgtatccaatccaagttagcagcatgttgcttactcgatatatatatacactgctgtaccgtgcagCTGATGAGTTGAAGCTGTTCAGGGAGAGCGAGGAGTACAAGGATGTAAGAACTCTGCTCAAATGGATTTGGATCTGGTTCTCCACAAGTGAAGTAACTCG

Basic information

species Zea mays
transcript GRMZM2G092497_T05
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76924739|gb|DV170110.1|DV170110
EST:     TCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCCGTTTCCCATCAT                         CTGATGAGTTGAAGCTGTTCAGGGAGAGCGAGGAGTACAAGGATGTAAGAA
genomic: TCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCCGTTTCCCATCATgtcagttctc ... taccgtgcagCTGATGAGTTGAAGCTGTTCAGGGAGAGCGAGGAGTACAAGGATGTAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagttagcagcatgttgcttactcgatatatatatacactgctgtaccgtgcagCTGATGAGTTGAAGCTGTTCAGGGAGAGCGAGGAGTACAAGGATGTAAGAACTCTGCTCAAATGGATTTGGATCTGGTTCTCCACAAGTGAAGTAACTCG
                tgcttac  putative branch site (score: 2)
                          atatatatatacact  TA-rich tract