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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgatctgcttgttcagggaaaaccattgccatgattatgtctaactttttcctcacttggccacatgattaattttctttatgtgcttttgccattggtaatagGAGGAGACTCAAAAGCATTGATGTTTGTGCAAATTAGCCCATCCGATAATGATGTTTCGGAAACATTGAGTTCACTAAACTTCGCTAGCCGTGTTCGGCG

Basic information

species Zea mays
transcript GRMZM2G092232_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092232_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g02290.2 (Oryza sativa), 3'ss of exon 5
gtaagatgatctgcttgttcagg-gaaaaccattgccatgatt------------atgtctaacttttt-------------------------------cctcacttggccacatgattaattt--tctttatgtgcttttgc-cattggtaatagGAGGAGACTCAAAAGCATTGATGTTTGTGCAAATTAGCCCATCCGATAATGATGTTTCGGAAACATTGAGTTCACTAAACTTCGCTAGCCGTGTTCGGCG
||||  ||| ||| |  |   |  || ||||||   ||| |||            || || ||  || |                                 |||||| || |||| ||||||||  |||||  |||||| | |  | || |||||||||| ||||||||||| || |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||| | ||||| || || |||||||| ||
gtaacctgacctgttcttctggaagagaaccatcttcataatttatcacttcaatatttccaatcttctatgtattttttgagcaattatcgtgtgtgtctttcacttagctacatcattaatttgctcttttggtgcttcttcatactgataatagGAGGGGACTCAAAAGCTTTAATGTTTGTGCAAATTAGCCCATCCAACAACGATGTGTCAGAAACTTTGAGCTCATTGAACTTTGCAAGTCGTGTTCGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcacttggccacatgattaattttctttatgtgcttttgccattggtaatagGAGGAGACTCAAAAGCATTGATGTTTGTGCAAATTAGCCCATCCGATAATGATGTTTCGGAAACATTGAGTTCACTAAACTTCGCTAGCCGTGTTCGGCG
               atgattaattttcttt  TA-rich tract