Sequence
atgc intronic sequence ATGC exonic sequence...gttcaaaataaagaccagctccagcacaagtgggctgttctatttattctttatttgcaaccagtccatcttcatccaagcgatagcattgcttttgcagGGTCCAATCAATTGAAGTAGCAGAGGTGGCGGCTAGCGGTGGCGTCTTTGTGCAATCTGACGGAGAGCATTTCGGCTTTCTGCCGACCAAGTTTTCAGTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G089860_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g03400.1 (Oryza sativa), 3'ss of exon 11
--------gttcaaaataa--agaccagctc-cagcacaagtgggctgttctatttattctt-tatttgcaaccagtccatcttcatccaagcgatagcattgcttttgcagGGTCCAATCAATTGAAGTAGCAGAGGTGGCGGCTAGCGGTGGCGTCTTTGTGCAATCTGACGGAGAGCATTTCGGCTTTCTGCCGACCAAGTTTTCAGTC
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caatgtttgttaagccttctcaaaatagctaacatcactattaggctgtttaactgggtattctatttggggtca------------ctaagtgacaatatttttgtcgcagAGTTCAGTCGATTGAAGTAGCAGAAAAGGAAGTTAGTGCTGACATCTTTGTGCAATCTGATGGGGAGCATTTTGGTTTTCTTCCAACCAAATTTTCAGTT
upper sequence: GRMZM2G089860_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g03400.2 (Oryza sativa), 3'ss of exon 11
-gttcaaaataa--agaccagctc-cagcacaagtgggctgttctattta-ttctttatttgcaaccagtccatcttcatccaagcgatagcattgcttttgcagGGTCCAATCAATTGAAGTAGCAGAGGTGGCGGCTAGCGGTGGCGTCTTTGTGCAATCTGACGGAGAGCATTTCGGCTTTCTGCCGACCAAGTTTTCAGTC-------
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tgttaagccttctcaaaatagctaacatcactattaggctgtttaactgggtattctatttggggtca------------ctaagtgacaatatttttgtcgcagagttcagTCGATTGAAGTAGCAGAAAAGGAAGTTAGTGCTGACATCTTTGTGCAATCTGATGGGGAGCATTTTGGTTTTCTTCCAACCAAATTTTCAGTTCTTCCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attctttatttgcaaccagtccatcttcatccaagcgatagcattgcttttgcagGGTCCAATCAATTGAAGTAGCAGAGGTGGCGGCTAGCGGTGGCGTCTTTGTGCAATCTGACGGAGAGCATTTCGGCTTTCTGCCGACCAAGTTTTCAGTC
ttgctttt CT-rich tract
ttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcaaaataaagaccagctccagcacaagtgggctgttctatttattctttatttgcaaccagtccatcttcatccaagcgatagcattgcttttgcagGGTCCAATCAATTGAAGTAGCAGAGGTGGCGGCTAGCGGTGGCGTCTTTGTGCAATCTGACGGAGAGCATTTCGGCTTTCTGCCGACCAAGTTTTCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA