1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaggtttctttgagttgcctgcatcctttcttgaagtggtgcttgtaccctttttggttttaccatattgagctaaattctttagatgcagatcttttttaccctgttctagtcttgaataggcctatgaaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAGGAGGGAAAGCGTTTGCAACATACACTAATGCCAAAAGAATAGTGAAAT
species | Zea mays |
transcript | GRMZM2G085577_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTTACAGATACAAAAAATTAAAG GGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAEST: gi|32832224|gb|CD971902.1|CD971902
genomic: GTTTACAGATACAAAAAATTAAAGgtaggtttct ... aaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATA
EST: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAG GGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAEST: gi|24934476|gb|CA452694.1|CA452694
genomic: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAGgtaggtttct ... aaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATA
EST: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAG GGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAEST: gi|76924590|gb|DV170029.1|DV170029
genomic: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAGgtaggtttct ... aaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATA
EST: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAG GGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAEST: gi|94472102|gb|EB701060.1|EB701060
genomic: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAGgtaggtttct ... aaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATA
EST: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAG GGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATA
genomic: GACAGCTCCTAAACATATTGGGAGCTGTTTACAGATACAAAAAATTAAAGgtaggtttct ... aaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATA
gatgcagatcttttttaccctgttctagtcttgaataggcctatgaaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAGGAGGGAAAGCGTTTGCAACATACACTAATGCCAAAAGAATAGTGAAAT
atctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtttctttgagttgcctgcatcctttcttgaagtggtgcttgtaccctttttggttttaccatattgagctaaattctttagatgcagatcttttttaccctgttctagtcttgaataggcctatgaaccttgtagGGAATGAGTGCAGAAGAGAAGCAGAAGGTCACACCGCGCACTGTCATGATAGGAGGGAAAGCGTTTGCAACATACACTAATGCCAAAAGAATAGTGAAAT
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