1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agtccttggtaacttgtcttcgataggagccagacctgactgatgtttgatatttcttttcctggagcaaaacctcaaagctgcgatgaactgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG
species | Zea mays |
transcript | GRMZM2G083716_T05 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGANNNNNNNAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|78080917|gb|DV509329.1|DV509329
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|13515993|gb|BG518269.1|BG518269
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|148983128|gb|EE029059.2|EE029059
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGANNNNNNNAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|211019215|gb|FL365163.1|FL365163
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|32928664|gb|CF033476.1|CF033476
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|4573295|gb|AI586854.1|AI586854
genomic: ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|32929769|gb|CF034581.1|CF034581
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|149099157|gb|EE185182.2|EE185182
genomic: ACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|32945093|gb|CF049912.1|CF049912
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|5069818|gb|AI737783.1|AI737783
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|32912989|gb|CF017801.1|CF017801
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|60342862|gb|DN209835.1|DN209835
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|60395675|gb|DN228545.1|DN228545
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|211360073|gb|FL471663.1|FL471663
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|211268071|gb|FL357474.1|FL357474
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|8368410|gb|BE051355.1|BE051355
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|5030570|gb|AI714764.1|AI714764
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|6601638|gb|AW256034.1|AW256034
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|60355768|gb|DN222741.1|DN222741
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|4804136|gb|AI666002.1|AI666002
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|6031526|gb|AW076428.1|AW076428
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|5761879|gb|AI966852.1|AI966852
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|211500916|gb|FL458285.1|FL458285
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCATGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|120480889|gb|EH211078.1|EH211078
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|71764883|gb|DR962820.1|DR962820
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|211298346|gb|FL366289.1|FL366289
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|4609507|gb|AI600346.1|AI600346
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|32914512|gb|CF019324.1|CF019324
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|211197446|gb|FL310846.1|FL310846
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGEST: gi|148961769|gb|EE012546.2|EE012546
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
EST: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAG GTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
genomic: CTGGACAGTACGAGGACCTGATGGCTGCTGGTATCATTGACCCCACCAAGgtttgtggcc ... ctgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTG
tttgatatttcttttcctggagcaaaacctcaaagctgcgatgaactgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG
gtttgat putative branch site (score: 5)
tatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtccttggtaacttgtcttcgataggagccagacctgactgatgtttgatatttcttttcctggagcaaaacctcaaagctgcgatgaactgtctgtagGTGGTGAGATGCTGCTTGGAGCACGCCGCGTCGGTGGCCAAGACCTTCCTGACATCAGATGTTGTGGTCGTCGATATCAAGGAGCCGGAGGCTGCACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG