1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cagcttggtatttgtttgaattgttactatgcacccctgatgttgcatatgatactacaagttattcatggtttcatgtcattgttgtaactaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCGCTTTGATGGACCTCTATTCTCTCGGTGAACGAACAAACTTGCAAGATG
species | Zea mays |
transcript | GRMZM2G083344_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|211430251|gb|FL453372.1|FL453372
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGNTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATSCGGTTGGTTTGTCEST: gi|211525667|gb|FL445646.1|FL445646
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|33096626|gb|CF056620.1|CF056620
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: GCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|9731654|gb|BE510406.1|BE510406
genomic: GCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG C-AATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|71760100|gb|DR958037.1|DR958037
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|32928246|gb|CF033058.1|CF033058
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|5018389|gb|AI714582.1|AI714582
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGEST: gi|32165070|gb|CD670388.1|CD670388
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGG
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|37381423|gb|CF627595.1|CF627595
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|71328475|gb|DR800887.1|DR800887
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|76930049|gb|DV172255.1|DV172255
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|71768355|gb|DR966292.1|DR966292
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|32935156|gb|CF039968.1|CF039968
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|32862760|gb|CF002442.1|CF002442
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|211083989|gb|FL462610.1|FL462610
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAMATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|113703585|gb|EE681089.1|EE681089
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|50328059|gb|CO523185.1|CO523185
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|9731653|gb|BE510405.1|BE510405
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG C-AATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|78104082|gb|DV522500.1|DV522500
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGTTAAGATGGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCEST: gi|32837170|gb|CD976848.1|CD976848
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
EST: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAG CAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGNTGGTTTGTC
genomic: CTGGTGTTGCCCTCTACTCATTTATAAAGGCTAAGATTGAGGAGAAAAAGgtatgccttt ... ctaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTC
catatgatactacaagttattcatggtttcatgtcattgttgtaactaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCGCTTTGATGGACCTCTATTCTCTCGGTGAACGAACAAACTTGCAAGATG
aactaaa putative branch site (score: 2)
taactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcttggtatttgtttgaattgttactatgcacccctgatgttgcatatgatactacaagttattcatggtttcatgtcattgttgtaactaaatgcagCAAATAAAGAGTGCATAAGGTGTTGGCTGATGTGGATGCGGTTGGTTTGTCGCTTTGATGGACCTCTATTCTCTCGGTGAACGAACAAACTTGCAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
cagcttg
- - - - - -ttgtttg
- - - - - - - - - - -tgttact
- - - - - - - - - - - - - - atgcacc
- - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - -tgatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta