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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccgccagagctccatatacgagcgacttatcgcgctgtgcctgtgcaagtgcttcgctttagatagattgctttgttttttgtgtactgatagatgtctcacaacacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGAGGGGCTGTCCGCAGTGGCCTTTCAGGATCGAAG

Basic information

species Zea mays
transcript GRMZM2G082502_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082502_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os10g36780.2 (Oryza sativa), 3'ss of exon 11
gtgagtccgccagagctccatatacgagc-----gacttatcgcgctgtgcctgtgcaagtg---cttcgctttagatagat-tgctttgttttttg--tgtactgatagatgtctcacaacacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGAGGGGCTGTCCGCAGTGGCCTTTCAGGATCGAAG
|||||    | |      ||| ||| |       | ||| | ||  | | | |||  | |||   | | ||| |   |  || | || |  ||   |  || ||| |  || |     |||||  || |||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||| || || || ||    ||||||||||| ||||
gtgagctttcaaagttctcatctactaatatgttggcttgttgctatctccatgtttaggtgtagccttgctctttgtgtatctactctacttgcagcatgcactaactgaggctcgccaacatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGAGAGGATGCCCCCAACTCCCTTTCAGGATTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71759256|gb|DR957193.1|DR957193
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|91055261|gb|EB165679.1|EB165679
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATTTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|18180479|gb|BM381689.1|BM381689
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|88750785|gb|DY534926.1|DY534926
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|8367939|gb|BE050884.1|BE050884
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagatagattgctttgttttttgtgtactgatagatgtctcacaacacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGAGGGGCTGTCCGCAGTGGCCTTTCAGGATCGAAG
             tttgtttttt  TA-rich tract