Sequence
atgc intronic sequence ATGC exonic sequencegtacggaacctctcagcgttttcctttatagttttactgcgatcagcagagctactagcagttaccagcaggcagttaactttgacggcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g47490.1 (Oryza sativa), 3'ss of exon 12
gtacggaacctctcagcgttttcctttatagttttactgc--gatcagcagagctactagcagttaccagcaggcagttaac-tttgacggcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
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------------gtaacatataaatatataattctaccaccttaccataaaatctttcgtttctctccaacatatattaagcattttcttgtagATGGTTGCCCTTGTCGGAGAGAGCGGCTGTGGCAAATCAACCGTGATAGCACTACTGGAAAGATTTTACGACCCTGATTCAGGAACAGTGACACTAGACG
upper sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 11
lower sequence: EFJ10214 (Selaginella moellendorffii), 3'ss of exon 11
gtacggaacctctcagcgttttcctttatagttttactgcgatcagcagagctactagcagttaccagcaggcagttaactttgacg-gcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
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-------------gtacgtctcccttttaaatttt----cggtt-----------ttgaaatttcc--cgggctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAATCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG
upper sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 11
lower sequence: EFJ12574 (Selaginella moellendorffii), 3'ss of exon 11
gtacggaacctctcagcgttttcctttatagttttactgcgatcagcagagctactagcagttaccagcaggcagttaactttgacg-gcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
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-------------gtacgtctcccttttaaatttt----cga-----------atttgaaatttcc--cggtctgttttctgtgttgcgcagACCATGGCGCTGGTCGGCGAGAGTGGAAGCGGCAAGTCCACAGTCATCTCGCTACTGGAGAGGTTCTACGACCCAGATTCGGGCAGCATTCTCATCGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcgatcagcagagctactagcagttaccagcaggcagttaactttgacggcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
ttaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacggaacctctcagcgttttcctttatagttttactgcgatcagcagagctactagcagttaccagcaggcagttaactttgacggcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG