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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcagtcccgtttctttatgattacccgttccaatgtccataactttgacatagtgcattgtctttactatgccaatttggtgacagaactgaaattttattatgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081682_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 3'ss of exon 11
gtaattcagtcccgtttctttatgattacccgttccaatgtccataactttgacatagtgcattgtctttactatgccaatttggtgacagaactgaaattttattatgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
                                     |    |||  |  ||  |||   |||| |      |||| ||   |||  | |  |||||| |||  || | | ||||||||||||| |||||||||||||||||||| ||||| |||||||||||
-----------------------------------gtactcacatgtcactgctatatcacatttttccatgtatgaca---tggatataatactgaattttgtttttatttttcagGAACACTCTTGATAGAGCCTAAACCACAAGAACCCACAAAACACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073602|gb|FL380705.1|FL380705
EST:     ACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: ACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
EST: gi|31349785|gb|CD434142.1|CD434142
EST:     TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
EST: gi|33092171|gb|CF052165.1|CF052165
EST:     TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
EST: gi|6194746|gb|AW146850.1|AW146850
EST:     TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
EST: gi|5296207|gb|AI782887.1|AI782887
EST:     TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
EST: gi|5846747|gb|AI999830.1|AI999830
EST:     TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: TAACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
EST: gi|211434578|gb|FL418942.1|FL418942
EST:     ACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACG                         GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
genomic: ACTTTCTTCAAGCTGCTGTTGACTACAAGAAGAAGATTGGATTCAACGgtaattcagt ... tgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctttactatgccaatttggtgacagaactgaaattttattatgtatttcagGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA
                             aactgaaattttatta  TA-rich tract