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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcttgatattttgtctgtgtctgatgtgaagacttttttccttgctcgtttccttatctgcattccattagctgcagGACTTTCTTTTAGATGAA

Basic information

species Zea mays
transcript GRMZM2G081642_T03
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32858949|gb|CD998630.1|CD998630
EST:     GAGAATCACTTG                         GACTTTCTTTTAGATGAAA
genomic: GAGAATCACTTGgtaagtttct ... ttagctgcagGACTTTCTTTTAGATG-AA
EST: gi|78125549|gb|DV543933.1|DV543933
EST:     TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTGCTGCAG                    
genomic: TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCAC-T--T---Ggtaagtttct ... ttagc
EST: gi|21329781|gb|BQ485162.1|BQ485162
EST:     TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTG                         GACTTTCTTTTAGATGAAA
genomic: TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTGgtaagtttct ... ttagctgcagGACTTTCTTTTAGATG-AA
EST: gi|21481154|gb|BQ577837.1|BQ577837
EST:     TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTG                         GACTTTCTTTTAGATGAAA
genomic: TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTGgtaagtttct ... ttagctgcagGACTTTCTTTTAGATG-AA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtgaagacttttttccttgctcgtttccttatctgcattccattagctgcagGACTTTCTTTTAGATGAA
 gtctgat  putative branch site (score: 4)
                                        ttccatt  putative PPT
         actttttt  TA-rich tract