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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcttgatattttgtctgtgtctgatgtgaagacttttttccttgctcgtttccttatctgcattccattagCTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG

Basic information

species Zea mays
transcript GRMZM2G081642_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21481154|gb|BQ577837.1|BQ577837
EST:     TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCAC-T-                         -T---GGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGT
genomic: TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTGgtaagtttct ... attccattagCTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGT
EST: gi|21329781|gb|BQ485162.1|BQ485162
EST:     TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCAC-T-                         -T---GGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGT
genomic: TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTGgtaagtttct ... attccattagCTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGT
EST: gi|78125549|gb|DV543933.1|DV543933
EST:     TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTG                         CTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGT
genomic: TGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTGgtaagtttct ... attccattagCTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtctgatgtgaagacttttttccttgctcgtttccttatctgcattccattagCTGCAGGACTTTCTTTTAGATGAAAACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG
  gtctgat  putative branch site (score: 4)
                cttttttccttgctcg  putative PPT
               actttttt  TA-rich tract