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gtaagcatttgtttctcagtgcgatgtaattggtatatgtgttttggtttttttacccatatgctcaatgtgtttctgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGCAGAAGCAGAAGCAGGCAAACCCTGACCGATCAGAGTATCTGTACTCTA
species | Zea mays |
transcript | GRMZM2G081188_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGEST: gi|74240504|gb|DT648418.1|DT648418
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGEST: gi|211302733|gb|FL372536.1|FL372536
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: GCTCAAGGACCCAGGCAAA-TCAGACCACATTATTAAAGCTGCTTTTCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCEST: gi|148953713|gb|EC899077.2|EC899077
genomic: GCTCAAGGACC-AGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTC
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGEST: gi|32936978|gb|CF041797.1|CF041797
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: TGCTCAAGGACCAAGCAAAATCAGACGACATTATCAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGGCCGAAGEST: gi|31353527|gb|CD437884.1|CD437884
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATCAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCEST: gi|60339465|gb|DN206438.1|DN206438
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGC
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATCAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGGCTGAAGEST: gi|211481484|gb|FL479226.1|FL479226
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGEST: gi|60397619|gb|DN230435.1|DN230435
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGEST: gi|32930803|gb|CF035615.1|CF035615
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
EST: TGCTCAAGGGCCAAGCAAAATCAGACGACATTATCAAAGCTGCTTTCCAT GCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGGCTGAAG
genomic: TGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCCATgtaagcattt ... tgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAG
ggtatatgtgttttggtttttttacccatatgctcaatgtgtttctgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGCAGAAGCAGAAGCAGGCAAACCCTGACCGATCAGAGTATCTGTACTCTA
tttctgct CT-rich tract
ttttggttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatttgtttctcagtgcgatgtaattggtatatgtgttttggtttttttacccatatgctcaatgtgtttctgctgtacagGCTCATGTGCTATTGCATTTTATTAATGCATCACATGCTCGGAGACTGAAGCAGAAGCAGAAGCAGGCAAACCCTGACCGATCAGAGTATCTGTACTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC