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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatacctctcatctgtgctcatgtttgtgcacaagacaaaaacttgtttaaattgaaactgtaagcatcttttaatttgacttcctaagtattacagGAATTTAACAGTGAGCCTGTGATGCCAATATATTCAGCTAGACCAGATCAAGTTGTGAAGGCACTTAAAAACGTGTATAATATTGCATTGAACAAACTTA

Basic information

species Zea mays
transcript GRMZM2G079080_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079080_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 11
gtatgatacctctcatctgtgctcatgtttgtgcacaagacaaaaacttgtttaaattgaa--actgtaagcatcttttaa--tttgacttcctaagtattacagGAATTTAACAGTGAGCCTGTGATGCCAATATATTCAGCTAGACCAGATCAAGTTGTGAAGGCACTTAAAAACGTGTATAATATTGCATTGAACAAACTTA
||||   ||   | |  |   || ||| || |||| || |      ||| | |||  | |     ||   ||||||||| |  |||  ||       | || |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| | |||||| |||||  | |||||||||||  |||| ||||| || |
gtatataactcttaacttcatctaatggttttgcataatattggtgcttttataatgttatttgttggctgcatcttttcagttttatctctgctcttcttgcagGAATTCAACAGTGAGCCTGTGATACCAATATACTCAGCTAGACCAGATCAAGTAGAGAAGGCGCTTAAGCATGTGTATAATATGTCATTAAACAAGCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttaaattgaaactgtaagcatcttttaatttgacttcctaagtattacagGAATTTAACAGTGAGCCTGTGATGCCAATATATTCAGCTAGACCAGATCAAGTTGTGAAGGCACTTAAAAACGTGTATAATATTGCATTGAACAAACTTA
                        atcttttaatttga  TA-rich tract