1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tagtgcgcacaacgaaaacttcactttgtaactttgtgtatcttccttgtcatctgatctaatgagaagtactctgaaataatgcagttcacaatcccagGAGGTCGGCATGCAGTGCATCACGCAGGTCTCTTGCAGGAAGCAGGGGCAGGTCGGGTGTTGCGCGCAGCAGCGGCAGCGACAACAGCTTCTATTGAAGC
species | Zea mays |
transcript | GRMZM2G079031_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|47961667|gb|CN844376.1|CN844376
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG GAGGTCGGCATGCAGTGCATCACGCAGGTCTCTTGCAGGAAGCAGGGGCAGEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccagGAGGTCGGCATGCAGTGCATCACGCAGGTCTCTTGCAGGAAGCAGGGGCAG
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG TEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
EST: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAG T
genomic: GGAATCCTTCACCAATTCTTCGTGCTTGTGCTGCCTTTGCCCTTCTTCAGgtttgtttcc ... acaatcccag-
cttgtcatctgatctaatgagaagtactctgaaataatgcagttcacaatcccagGAGGTCGGCATGCAGTGCATCACGCAGGTCTCTTGCAGGAAGCAGGGGCAGGTCGGGTGTTGCGCGCAGCAGCGGCAGCGACAACAGCTTCTATTGAAGC
atctaat putative branch site (score: 2)
tgaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgcgcacaacgaaaacttcactttgtaactttgtgtatcttccttgtcatctgatctaatgagaagtactctgaaataatgcagttcacaatcccagGAGGTCGGCATGCAGTGCATCACGCAGGTCTCTTGCAGGAAGCAGGGGCAGGTCGGGTGTTGCGCGCAGCAGCGGCAGCGACAACAGCTTCTATTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -caacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca