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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatctcccagtggtagtcgacatgtgaaatacttcagccacaatttgttgtaacctacttttaatttcatggcatgatattctctatttctattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTCAAATGATTTCAAACTGCGATGGTTCATCTACACCACTTGATCATCCTGC

Basic information

species Zea mays
transcript GRMZM2G077299_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 3'ss of exon 11
tatctcccagtggtagtcgacatgt-------gaaatacttcagccacaatttgttgtaacctacttttaatttcatggcatgatattctctatttctattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTCAAATGATTTCAAACTGCGATGGTTCATCTACACCACTTGATCATCCTGC
      ||| || ||    ||||||       ||| |   |     |||| | |||| |  ||  |||||  | |||| ||||||||||||| | || |||  |||||||| ||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||| || |||| |||||| |  |||||||| ||||||||
----ctccaatgataaggcacatgtttgacttgaattgtgtggagaacaact-gttgaattctcattttaggtacatg-catgatattctct-tatccattatacagGTAATTACCTCAAGTTTTATAATGCTATAAGGGAGGCCTATCCAGACATTCAAATGATTTCAAATTGTGATGCTTCATCAAGTCCACTTGACCATCCTGC

upper sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 3'ss of exon 11
tatctcccagtggtagtcgacatgt-------gaaatacttcagccacaatttgttgtaacctacttttaatttcatggcatgatattctctatttctattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTCAAATGATTTCAAACTGCGATGGTTCATCTACACCACTTGATCATCCTGC
     |||| ||||| |  ||| ||       ||| |   |      ||| | ||||    || ||||||  |  ||| |||||| |||||| | ||  ||  |||||||| ||||||||||| || |||||||||||  |||||||||| |||||||||||||||||||| || |||| |||||| | ||||||||| ||||||||
----ccccaatggtactgcacaagttttacttgaactgtgtggagagcaact-gttgagttctccttttaggtatatg-catgatgttctct-tatccgttatacagGTAATTACCTCAAGTTTTATAATGCTATAAGGGAGGCCTATCCGGACATTCAAATGATTTCAAATTGTGATGCTTCATCAAGACCACTTGACCATCCTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32847594|gb|CD987275.1|CD987275
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|213170538|gb|FM181869.1|FM181869
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|116814377|gb|EC856917.1|EC856917
EST:     AAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTTACCGCG                         GTAACTACCTCAAG-TCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: AAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAA-TTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|12045517|gb|BF727656.1|BF727656
EST:     GAAATATGTTGCAATTGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|32846175|gb|CD985856.1|CD985856
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|6095297|gb|AW119964.1|AW119964
EST:     GAAATATGTTGCAATTGGAAATGAAGATTGNGGGAAAAAATTTTACCGCG                         GTAACCTACCTTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACAT
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAAC-TACCT-CAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACAT
EST: gi|211082959|gb|FL420012.1|FL420012
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|32865761|gb|CF005443.1|CF005443
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|78179997|gb|DV550370.1|DV550370
EST:     GAAATATGTTGCAATTGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|211043015|gb|FL421679.1|FL421679
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|32846927|gb|CD986608.1|CD986608
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|32835529|gb|CD975207.1|CD975207
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|71441725|gb|DR822775.1|DR822775
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
EST: gi|32846588|gb|CD986269.1|CD986269
EST:     GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCG                         GTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC
genomic: GAAATATGTTGCAATAGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGgtaaatttac ... tattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtaacctacttttaatttcatggcatgatattctctatttctattgaacagGTAACTACCTCAAGTTCTACAATGCTATAAGACAGGCCTATCCAGACATTCAAATGATTTCAAACTGCGATGGTTCATCTACACCACTTGATCATCCTGC
                                  ttctctatttctatt  CT-rich tract
          tacttttaatttcat  TA-rich tract