1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tacacatagaaaattatctagcgtttgtgcacctagattgatctgttctgacagcatctgttctcatttctagcatctgttctcatttcttgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCATACTCTTATCCGTGATTACGATGCAGAGGTGTCAAGACTGGACCGATTT
species | Zea mays |
transcript | GRMZM2G074351_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG GTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCAEST: gi|211121225|gb|FL444926.1|FL444926
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCAEST: gi|93283666|gb|EB675930.1|EB675930
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG GTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
ttctgacagcatctgttctcatttctagcatctgttctcatttcttgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCATACTCTTATCCGTGATTACGATGCAGAGGTGTCAAGACTGGACCGATTT
ttctgac putative branch site (score: 31)
tctgttctcatttctt putative PPT
atttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacacatagaaaattatctagcgtttgtgcacctagattgatctgttctgacagcatctgttctcatttctagcatctgttctcatttcttgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCATACTCTTATCCGTGATTACGATGCAGAGGTGTCAAGACTGGACCGATTT
-acacata
- - - - - - - - - - - - - gtgcacc
- - - - - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg