1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ggccgttttgctcatttgactgcaattatggaaggatataaataggcaacgtcttatttttttgcttaacatactgtttttttttttgaaactttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGAAGACTAGCTTTAAGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAG
species | Zea mays |
transcript | GRMZM2G073774_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCTGATAAAGAAGGATTTGAGATAAATGTTGTGEST: gi|67029833|gb|CO458582.1|CO458582
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGEST: gi|211287326|gb|FL348627.1|FL348627
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGATAAATGTTGTGEST: gi|13315813|gb|BG410365.1|BG410365
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACGCATCCAGAGATTAGTATGGTTGGATTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGEST: gi|31362407|gb|CD446764.1|CD446764
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGEST: gi|78075765|gb|DV504199.1|DV504199
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGEST: gi|211284887|gb|FL322128.1|FL322128
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGATAAATGTTGTGEST: gi|60340265|gb|DN207238.1|DN207238
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGATAAATGTTGTGEST: gi|31353176|gb|CD437533.1|CD437533
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
EST: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGACTGACAGAG CCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
genomic: CAGCAGCATGTTTCACCCATCCAGAGATTAGTATGGTTGGATTGACAGAGgtaagttatc ... actttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTG
gcaacgtcttatttttttgcttaacatactgtttttttttttgaaactttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGAAGACTAGCTTTAAGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAG
gcttaac putative branch site (score: 323)
ctttctc putative PPT
ttatttttttgcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggccgttttgctcatttgactgcaattatggaaggatataaataggcaacgtcttatttttttgcttaacatactgtttttttttttgaaactttctcagCCACAAGCCAGAGAGAAGGCAGATAAAGAAGGATTTGAGGTAAATGTTGTGAAGACTAGCTTTAAGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG