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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgataggataggaaaactaatgtataaaaagaatgttgacctatagcattgcttatgctaaccaactattaatttgttttgttttgttatgattctgaaactgaatcggttctatgatggcagGTACTTGCTGTGAAGAAGATAGACAGCGCTTCGCTGTCTCTGTACGAAGAAGACAACTTTCTCGCGGTTGTGTCGAACGTGTCCCGGCTCAGGCATCCAA

Basic information

species Zea mays
transcript GRMZM2G071573_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071573_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 3'ss of exon 11
-----------------gtaaatgataggataggaaaactaatgtataaaaagaatgttgacct---atagcattgcttatgctaaccaactattaatttgttttgttttgttatgattctgaaactgaatcggttctatgatggcagGTACTTGCTGTGAAGAAGATAGACAGCGCTTCGCTGTCTCTGTACGAAGAAGACAACTTTCTCGCGGTTGTGTCGAACGTGTCCCGGCTCAGGCATCCAA
                 ||||   || |      || ||  |  ||| |     |  ||  | |   || || ||   |||| | | ||| | || |||||  | | | ||      |   | ||||||||    |   |||| |||||||||||| ||||||||||||||||| || || || ||  |||| |||||||| |||||||| | ||||||||||| | | || || || ||||| ||||
gtaaaacatcacttgcagtaatctattgttggtcaatacagaaatattactttgaacttagcatggtattgccttatatatgttcaacaagtgtttatttgcatagctatgacgcagt---ggaactgaattctgtgcttgatcgcagGTACTTGCAGTGAAGAAGATAGACAGTGCGTCACTTTCCTTGTATGAAGAAGATAACTTTCTTGAGGTTGTGTCGAGCATTTCACGACTTAGGCACCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatttgttttgttttgttatgattctgaaactgaatcggttctatgatggcagGTACTTGCTGTGAAGAAGATAGACAGCGCTTCGCTGTCTCTGTACGAAGAAGACAACTTTCTCGCGGTTGTGTCGAACGTGTCCCGGCTCAGGCATCCAA
 tattaat  putative branch site (score: 2)
        ttttgttttgttat  TA-rich tract