1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatggtgttccgtattccacatccttactattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAACCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGTAGAAGAGATTAT
species | Zea mays |
transcript | GRMZM2G069916_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGC-CAGCAAGGATCGCAACGGEST: gi|60349607|gb|DN216580.1|DN216580
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGG
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32847638|gb|CD987319.1|CD987319
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|88757903|gb|DY542044.1|DY542044
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: CAGGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|83278840|gb|DV942848.1|DV942848
genomic: CAGGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: CAGGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|94476347|gb|EB705305.1|EB705305
genomic: CAGGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32833686|gb|CD973364.1|CD973364
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: AAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCATCGGCCGGTCGTCCAGGGATAGAGAEST: gi|149000972|gb|EE038212.2|EE038212
genomic: AAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32847430|gb|CD987111.1|CD987111
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32835473|gb|CD975151.1|CD975151
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|88756296|gb|DY540437.1|DY540437
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGGGAAATAAAAGGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|60340812|gb|DN207785.1|DN207785
genomic: GAGCAGAGAAATAAAA-GGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32834150|gb|CD973828.1|CD973828
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|13178510|gb|BG349768.1|BG349768
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|60400106|gb|DN232913.1|DN232913
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|13178184|gb|BG349442.1|BG349442
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCGCGGTCGTCCAGGGATAGAGEST: gi|16377976|gb|BI992214.1|BI992214
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGC-CGGTCGTCCAGGGATAGAG
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAEST: gi|71330189|gb|DR801853.1|DR801853
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCA
EST: CAGGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
genomic: CAGGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
actattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAACCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGTAGAAGAGATTAT
tccttac putative branch site (score: 168)
tgttttt putative PPT
atgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgttccgtattccacatccttactattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAACCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGTAGAAGAGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA