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gtaagattcttttctgagttgcagttttaatgttctattttgtactattttattgattgccactaactaatccattgcgctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG
species | Zea mays |
transcript | GRMZM2G069676_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTEST: gi|32933693|gb|CF038505.1|CF038505
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTEST: gi|60341753|gb|DN208726.1|DN208726
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTEST: gi|32832812|gb|CD972490.1|CD972490
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTEST: gi|33094155|gb|CF054149.1|CF054149
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
EST: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
genomic: TGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAAgtaagattct ... ctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACT
ctattttgtactattttattgattgccactaactaatccattgcgctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG
tactattttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcttttctgagttgcagttttaatgttctattttgtactattttattgattgccactaactaatccattgcgctggtgctagCATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA