1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatatccttatcctcgcactatgagctgtgagaattgctagctgttgggttcatttaacacctctgtatgttaactcatctcgtggcatcgtaattgcagTAATTTGTTTCGTGTTTTTGGTTGTTCTCCTGAAAGCGTGGAGGCATCAACGTTGGAAGCCAGCAGAAATCCCATGAG
species | Zea mays |
transcript | GRMZM2G069631_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAACTGGTTCTTATAG TAATTTGTTTCGTGTTTTTGGTTGTT-TCCTGAAAGCGTGGAGGCATCAACEST: gi|211227826|gb|FL399539.1|FL399539
genomic: CAACTGGTTCTTATAGgtatatcctt ... gtaattgcagTAATTTGTTTCGTGTTTTTGGTTGTTCTCCTGAAAGCGTGGAGGCATCAAC
EST: GAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAG TAATTTGTTTCGTGTTTTTGGTTGTTCTCCTGAAAGCGTGGAGGCATCAACEST: gi|71772341|gb|DR970277.1|DR970277
genomic: GAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAGgtatatcctt ... gtaattgcagTAATTTGTTTCGTGTTTTTGGTTGTTCTCCTGAAAGCGTGGAGGCATCAAC
EST: GAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAG TAATTTGTTTCGTGTTTTTGGTTG
genomic: GAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAGgtatatcctt ... gtaattgcagTAATTTGTTTCGTGTTTTTGGTTG
tgggttcatttaacacctctgtatgttaactcatctcgtggcatcgtaattgcagTAATTTGTTTCGTGTTTTTGGTTGTTCTCCTGAAAGCGTGGAGGCATCAACGTTGGAAGCCAGCAGAAATCCCATGAG
tgttaac putative branch site (score: 2)
tcatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatccttatcctcgcactatgagctgtgagaattgctagctgttgggttcatttaacacctctgtatgttaactcatctcgtggcatcgtaattgcagTAATTTGTTTCGTGTTTTTGGTTGTTCTCCTGAAAGCGTGGAGGCATCAACGTTGGAAGCCAGCAGAAATCCCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG