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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagacatgcctgtacgcttttttcacctcgaacggacatgtgtatttttgcatacattgttttattgaagtattttatgaatgtgtgatttttcgctcagGTTGTTAGGAGTGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCG

Basic information

species Zea mays
transcript GRMZM2G066485_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 3'ss of exon 11
aagacatgcctgtacgct---tttttcacctcgaacggacatgtgtatttttgcatacattgttttattgaagtat-tttatgaatgtgtgatttttcgctcagGTTGTTAGGAGTGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCG
  || |||| ||||  ||   ||  | | ||   |     |    |  |  |   | |||    | |||  ||||  || |||||| | |   |||| | ||||||  |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |
--gatatgcttgtatactaaattactaaactaacattagaaaccattataataattgcatcaaataattctagtaagttaatgaatttata--ttttggttcagGTAATTAGAAGTGTTGGTCAATGGTCAGCTGGAACCACTCAAATCGAAGGAAGCATCCACAATGCCTATTTTTCTCTTATTGAAAAGGCAGAACATTTTG

upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 12
-aagacatgcctgtacgcttttttcacctcgaacggacatg-tgtatttttgcatacattgttttattgaagtattttatgaatgtgtgatttttcgctcagGTTGTTAGGAGTGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCG
 |  ||||     ||    ||||   | |   ||    ||| |||   |||    |||||| ||  ||| | | | |          | |  | | | | ||||| ||||||||||  |||||||||| ||||| || | |||||  ||||  |||||||||||||| || |  ||||| |||||||| || ||| ||||| 
cattacattgtcttatttcttttgttcttgtcacttttatgctgtcaatttttcaacattggtt-gttgtattttctctcattaaaataacctattgat-agGTTATTAGGAGTGTGAGTCAATGGTCTGCTGGAACAAGTCAAACCGAAGAGAGCATCCACAATGCTTATTGCTCTCTTATTGAGAAAGCTGAATACTTCA

upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 12
aagacatg--cctgtacgcttttttcacctcgaacggaca-tgtgtattttt--gcatacattgttttattgaagtattttatgaatgtgtgatttttcgctcagGTTGTTAGGAGTGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCG
|  ||||   | | |    ||| ||| | ||      |   ||   ||||||   ||||  ||||| ||||    | | | || ||  |   |          ||||| ||||||| ||  |||||||||| ||||| || | ||||| |||||  ||||||||||||||||| |  ||||| |||||||| || ||| ||||| 
attacattatcttatttcttttgttctcgtcacttttatgctgccaatttttcaacataggttgttgtattt---tctctcattaaaata--accaaattgatagGTTATTAGGAGCGTAAGTCAATGGTCTGCTGGAACAAGTCAAACTGAAGAGAGCATCCACAATGCCTATTGCTCTCTTATTGAGAAAGCTGAATACTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcatacattgttttattgaagtattttatgaatgtgtgatttttcgctcagGTTGTTAGGAGTGTCGGTCAATGGTCAGCTGGGACCACTCAAATTGAAGGAAGCATCCACAATGCCTACTTTTCTCTGATTGAGAAGGCAGAACACTTCG
                                           tttttcgctc  CT-rich tract
      atacattgttttattg  TA-rich tract