Sequence
atgc intronic sequence ATGC exonic sequencegtagatttcaatgttcagagctgttttttttctgttgggcaacgctttagaatcagacctcaaggcatctggtctatgcttatgcagATTAAGTTGGACAAAGAGAAGAAAATCCTCTCCATTTGGGATAGGGGTATTGGTATGACCAAGGAAGATCTTATTAAGAACCTTGGAACGATTGCTAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA14G40320.4 (Glycine max), 3'ss of exon 4
-------------------------------------------gtagatttcaatgttcagagctgttttttttctgt-tgggcaacgctttagaatcag-acctcaaggc--atctggtctatgcttatgc---agATTAAGTTGGACAAAGAGAAGAAAATCCTCTCCATTTGGGATAGGGGTATTGGTATGACCAAGGAAGATCTTATTAAGAACCTTGGAACGATTGCTAAAT
|| | ||| | || | | | | | || | |||| ||| | | | | | | || ||| | ||| |||||||||||||||| || |||||||| ||||| ||| | || || ||||| |||||||| ||||| ||| | || ||||| | || || || || ||||
gttagtattgctatattctgattattatgcttttttttttaaggttgtttttggctatatgatttttatgaatacagtctaagcaatgctggtgttttattgttttggaactaaacttaaacatgttggtgctacagATTAAGTTGGACAAGGAAAAGAAAATTCTCTCAATTCGAGACAGAGGTATCGGTATGACGAAGGAGGATTTGATAAAGAATTTGGGGACAATAGCGAAAT
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA17G37820.1 (Glycine max), 3'ss of exon 4
-----------gtagatttcaatgttcagagctgttttttttctgttg--ggcaacgctttagaatcagacctcaaggcatctggtctatgcttatgcagATTAAGTTGGACAAAGAGAAGAAAATCCTCTCCATTTGGGATAGGGGTATTGGTATGACCAAGGAAGATCTTATTAAGAACCTTGGAACGATTGCTAAAT
|| ||| | | | | | || ||| |||||| | | | | | || | | ||||||||||||||||| || |||||||| ||||| ||| | || || |||||||||||||| ||||| ||| | || ||||| | || || || || |||
ggttagtattgctaaattctggttattatgaagacagtctaaacaatgccggcggtgctttattgttttgcaactaaactaaaacatgctggtgctacaGATTAAGTTGGACAAGGAAAAGAAAATTCTCTCAATTCGAGACAGAGGTATTGGTATGACGAAGGAGGATTTGATAAAGAATTTGGGGACAATAGCAAAA-
upper sequence: GRMZM2G063988_T02 (Zea mays), 3'ss of exon 11
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 4
----gtagatttcaatgttcagagctgttttttttctgttgggcaacgctttagaatcagacctcaaggcatctggtctatgcttatgcagATTAAGTTGGACAAAGAGAAGAAAATCCTCTCCATTTGGGATAGGGGTATTGGTATGACCAAGGAAGATCTTATTAAGAACCTTGGAACGATTGCTAAAT
|| || | | |||| | ||| | || | ||| | ||| ||| | || | | | | | ||||||||||| || ||||| || ||||||||||| || ||| | ||||| ||||| |||||||| ||||| ||| | || |||||| | ||||| || || ||||
gttagttaatattactgttgtaaaaattttgtattttcttgtttataatttttctgacag-tttgaattcttataatatgataaaatgcagATTAAATTAGACAAGGAAAAGAAAATCCTGTCAATTCGTGATAGAGGTATAGGTATGACAAAGGATGATTTAATCAAGAACTTAGGAACAATCGCAAAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgggcaacgctttagaatcagacctcaaggcatctggtctatgcttatgcagATTAAGTTGGACAAAGAGAAGAAAATCCTCTCCATTTGGGATAGGGGTATTGGTATGACCAAGGAAGATCTTATTAAGAACCTTGGAACGATTGCTAAAT
tttagaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatttcaatgttcagagctgttttttttctgttgggcaacgctttagaatcagacctcaaggcatctggtctatgcttatgcagATTAAGTTGGACAAAGAGAAGAAAATCCTCTCCATTTGGGATAGGGGTATTGGTATGACCAAGGAAGATCTTATTAAGAACCTTGGAACGATTGCTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC