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...agcatcagctcccagtggacgtcgtctgtccttactttctataatgacctcccccacccaaaaataataataatatctatttgtttctcctatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGTTGGAAGAGCGGCATTTGTATTCCCTTTGTCGTTCTTATCCAACCTAAGC
species | Zea mays |
transcript | GRMZM2G063492_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTGGGATGGATGCATTGGACATTGAGAAGTGGAAATTAGCTAGTAGCAG TCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGTEST: gi|89106454|gb|DY576671.1|DY576671
genomic: GTTGGGATGGATGCATTGGACATTGAGAAGTGGAAATTAGCTAGTAGCAGgtacctttcg ... tatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGT
EST: GTTGGGATGGATGCATTGGACATTGAGAAGTGGAAATTAGCTAGTAGCAG TCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGTEST: gi|18963602|gb|BM660527.1|BM660527
genomic: GTTGGGATGGATGCATTGGACATTGAGAAGTGGAAATTAGCTAGTAGCAGgtacctttcg ... tatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGT
EST: GTTGGGATGGATGCATTGGCCATTGAGAAGTGGAAATTAGCTAGTAGCAG TCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGT
genomic: GTTGGGATGGATGCATTGGACATTGAGAAGTGGAAATTAGCTAGTAGCAGgtacctttcg ... tatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGT
gacctcccccacccaaaaataataataatatctatttgtttctcctatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGTTGGAAGAGCGGCATTTGTATTCCCTTTGTCGTTCTTATCCAACCTAAGC
tctatttgtttctcct CT-rich tract
aaaaataataataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatcagctcccagtggacgtcgtctgtccttactttctataatgacctcccccacccaaaaataataataatatctatttgtttctcctatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGTTGGAAGAGCGGCATTTGTATTCCCTTTGTCGTTCTTATCCAACCTAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
-gcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata