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...gccagggaatgtcatctccctgtggtggttttttctattaattttgcgtttccaaatttttctttccaactctctcatgcagcttctttgctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTATGCATTAGGCTATGGCGCTGGTGCCCTTCTCCAAAGTGGGAAGACAGGA
species | Zea mays |
transcript | GRMZM2G059151_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAATTATTGCTAEST: gi|32826654|gb|CD966332.1|CD966332
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67014773|gb|CO443522.1|CO443522
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAATTATTGCTAEST: gi|67014279|gb|CO443028.1|CO443028
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAATTATTGCTAEST: gi|32801608|gb|CD953844.1|CD953844
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|6021533|gb|AW066461.1|AW066461
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAEST: gi|32831581|gb|CD971259.1|CD971259
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAA
EST: GCAGAGAAGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|32804076|gb|CD956312.1|CD956312
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|32795214|gb|CD947450.1|CD947450
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211286470|gb|FL080391.1|FL080391
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211286474|gb|FL080395.1|FL080395
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|31353849|gb|CD438206.1|CD438206
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|32804299|gb|CD956535.1|CD956535
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|149083928|gb|EE173305.2|EE173305
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GGCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTTTAACTATTGCTAEST: gi|32801889|gb|CD954125.1|CD954125
genomic: GGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|32908579|gb|CF013392.1|CF013392
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGG ATATGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACCATTGCTA
genomic: GCAGAGGGGAGATACTCTGCACATTTCAGAGGGCAAGCTCATTTCTTTGGgtaagcatta ... ctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
gcgtttccaaatttttctttccaactctctcatgcagcttctttgctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTATGCATTAGGCTATGGCGCTGGTGCCCTTCTCCAAAGTGGGAAGACAGGA
cttctttgctattt CT-rich tract
aaatttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagggaatgtcatctccctgtggtggttttttctattaattttgcgtttccaaatttttctttccaactctctcatgcagcttctttgctatttgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTATGCATTAGGCTATGGCGCTGGTGCCCTTCTCCAAAGTGGGAAGACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagctt