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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtatgtgcagatgcattgtgttgtttttatttaagcctttttttaatgttatcagaacaaacatctctaatgatatatctgtactgttgctacatgcagCCTGCATTTGATTTGAATTTGCTAGAAGATACCACCCATCAG

Basic information

species Zea mays
transcript GRMZM2G059010_T02
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934796|gb|CF039608.1|CF039608
EST:     TTCTCATTCCATCTGTGCGAGATGCTCACCATGACTTTGTTTTCCCTCAG                         CCTGCATTTGATTTGAATTTGCTAGAAGATACCACCCATCAG
genomic: TTCTCATTCCATCTGTGCGAGATGCTCACCATGACTTTGTTTTCCCTCAGgtttgtaatt ... ctacatgcagCCTGCATTTGATTTGAATTTGCTAGAAGATACCACCCATCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttatcagaacaaacatctctaatgatatatctgtactgttgctacatgcagCCTGCATTTGATTTGAATTTGCTAGAAGATACCACCCATCAG
                    ctctaat  putative branch site (score: 3)
                       taatgatatat  TA-rich tract