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...ttgtaatctgtttattaggtgatggaatttgcaacctcctgctattttttggagccattatcattttagcttacaacttcattgttttactgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTTATAGGGGAGCTGACTGCTGTGTTCTTGTATATGATGTCAACGTATCCA
species | Zea mays |
transcript | GRMZM2G058366_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211158731|gb|FL327701.1|FL327701
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211340444|gb|FL354255.1|FL354255
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211435902|gb|FL357604.1|FL357604
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|20803409|gb|BQ294459.1|BQ294459
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211522124|gb|FL314742.1|FL314742
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|15100485|gb|BI396276.1|BI396276
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|60353761|gb|DN220734.1|DN220734
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|22472958|gb|BU037438.1|BU037438
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAEST: gi|211093130|gb|FL308874.1|FL308874
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGA
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|20301264|gb|BQ164207.1|BQ164207
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGEST: gi|211267809|gb|FL345566.1|FL345566
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCG
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211403760|gb|FL312287.1|FL312287
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|149062811|gb|EE157528.2|EE157528
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211495186|gb|FL341359.1|FL341359
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTSACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211477104|gb|FL313896.1|FL313896
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTEST: gi|211165712|gb|FL359024.1|FL359024
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
EST: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAG ATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
genomic: ATTTCCTCACCAAGGAGGTCCAGATCGACGACCGCCTCTTCACACTGCAGgtctgcttgc ... tgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTT
tttttggagccattatcattttagcttacaacttcattgttttactgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTTATAGGGGAGCTGACTGCTGTGTTCTTGTATATGATGTCAACGTATCCA
agcttac putative branch site (score: 48)
ttttact putative PPT
attatcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaatctgtttattaggtgatggaatttgcaacctcctgctattttttggagccattatcattttagcttacaacttcattgttttactgaagcttagATATGGGATACGGCAGGACAGGAGCGGTTTCAAAGTCTTGGTGTGGCATTTTATAGGGGAGCTGACTGCTGTGTTCTTGTATATGATGTCAACGTATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - tctgttt
- - - - - - - - -ggtgatg
- - - - - - - - - - - - - atttgca
- - - - - - - - - - - - - - - - - cctcctg
- - - - - - - - - - - - - - - - - - - - - - - - - ggagcca