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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttgcttctttagtccatgaccatgcgttgtactcgccctgtccatgaattctgtcatcaaagcataacgaggtgcgctgggcaactctgacgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAGGGCGGTATCATCGACTCGGACGGGGAGGTGCTCGCGAGGGGCGACGGGT

Basic information

species Zea mays
transcript GRMZM2G057475_T03
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057475_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g37580.3 (Oryza sativa), 3'ss of exon 5
gtggttgcttctttagtccatgaccatgcgttgtactcgccctgt-ccatg--aattctgtcatcaaagcataacgaggtgcgctgggcaactctgacgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAGGGCGGTATCATCGACTCGGACGGGGAGGTGCTCGCGAGGGGCGACGGGT
             |   ||  ||  ||||  |  | |||     | || ||  | ||    | |       |  |      |  ||   ||           | |||||||||||  || |||| ||||||||  |||| |||||||||| |||||||||||| ||||||||||| || || |||||| ||||||| || || || |
-cacacagcaaaatccaccgagataatgccattcaatcgtttgattccgtgccactttctccttttttttctttctcaacccaatgtaaaatctc------tgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGGGCGGCATCATCGACTCCGATGGCGAGGTGATCGCGAGAGGGGATGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14244524|gb|BG840145.2|BG840145
EST:     AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
EST: gi|78089440|gb|DV517814.1|DV517814
EST:     AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
EST: gi|71309966|gb|DR791266.1|DR791266
EST:     AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
EST: gi|149072706|gb|EE160943.2|EE160943
EST:     AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
EST: gi|71441279|gb|DR822329.1|DR822329
EST:     AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
EST: gi|14206828|gb|BG840506.1|BG840506
EST:     AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
EST: gi|67017796|gb|CO446545.1|CO446545
EST:     ACTGCCCGCGGTGGGATGTTCTGGGGCTCGTGCTCCAGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGAT
EST: gi|78023377|gb|DV491764.1|DV491764
EST:     AGATGAAGGACGGCGCNTACGTGAACTCGCCGTGCGTGGAGTATTTCAAG                         GTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG
genomic: AGATGAAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGgtggttgctt ... cgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattctgtcatcaaagcataacgaggtgcgctgggcaactctgacgaacggcagGTGAAGGCGATCCGGATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAGGGCGGTATCATCGACTCGGACGGGGAGGTGCTCGCGAGGGGCGACGGGT
                                       ctctgac  putative branch site (score: 3)