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...tttgcaataatctgttaccgttaaatattcatagaaaggaagtaggttgcccttttcgttaggctttctaaaaagttggtcttttcgtttggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCATCGGAACGAGCTGGTAACAAGCCCGTCACTGGAGGAGATCGTCCATTAC
species | Zea mays |
transcript | GRMZM2G056975_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|14244555|gb|BG840684.2|BG840684
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|31362671|gb|CD447028.1|CD447028
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTCCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|67032629|gb|CO461378.1|CO461378
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTCCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|37421752|gb|CF648577.1|CF648577
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: AATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|6601843|gb|AW256284.1|AW256284
genomic: AATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTCCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|84970217|gb|DW468567.1|DW468567
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTTTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|18167286|gb|BM337125.1|BM337125
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|71445034|gb|DR826084.1|DR826084
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTTTGAGCGCTGTTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|89252718|gb|DY624504.1|DY624504
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTTTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGGGGAGCTTACATGTAACGCGCAEST: gi|86474441|gb|DY240811.1|DY240811
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTTTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|71596069|gb|DR906820.1|DR906820
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTCCTGAGCGCTGCTGATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|12968309|gb|BG265255.1|BG265255
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|16377664|gb|BI992045.1|BI992045
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCAEST: gi|211274635|gb|FL463120.1|FL463120
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
EST: GTCCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAA GATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
genomic: GTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcct ... ggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCA
gttgcccttttcgttaggctttctaaaaagttggtcttttcgtttggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCATCGGAACGAGCTGGTAACAAGCCCGTCACTGGAGGAGATCGTCCATTAC
ttctaaa putative branch site (score: 55)
tttctaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcaataatctgttaccgttaaatattcatagaaaggaagtaggttgcccttttcgttaggctttctaaaaagttggtcttttcgtttggttttgcagGATTAGCTACCTGGACATATTCAAGGTGGTGGAGCTTACATGTAACGCGCATCGGAACGAGCTGGTAACAAGCCCGTCACTGGAGGAGATCGTCCATTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - -ctgttac
- - - - - - - - - - - - - - -catagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaaaag