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...ggggctatgatggttgaacaagcccatctacctgttacatgtttttattagatataatcccgtgcataagtctctaactgatttctatttatcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT
species | Zea mays |
transcript | GRMZM2G052546_T07 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTTGACATTGGCTGGGGTCAG AGAATTCCTTTGACATATGACGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAEST: gi|32833578|gb|CD973256.1|CD973256
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
EST: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG AGAATTCCTTTGACATATGATGAGGAGTAAGGAGCTTGGTTTCTTGAGAAAEST: gi|74234762|gb|DT642676.1|DT642676
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
EST: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG AGA-TTCCTTTTGACATATGATGAEST: gi|32833853|gb|CD973531.1|CD973531
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTT-GACATATGATGA
EST: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG AGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAEST: gi|33091895|gb|CF051889.1|CF051889
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
EST: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG AGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
tattagatataatcccgtgcataagtctctaactgatttctatttatcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT
tttctatttatccttt CT-rich tract
tgatttctatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggctatgatggttgaacaagcccatctacctgttacatgtttttattagatataatcccgtgcataagtctctaactgatttctatttatcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT