1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gccgaccctcttttttctgaattctcaacgcagcagcatcaccatctcacttcgctttgttttgttttaatttgttttggctgcgttgcaatgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAGGAGGAGTTCATCCGGGCGACGGCCGGCGTGTGGAAGGAGCAGAAGCTGC
species | Zea mays |
transcript | GRMZM2G052476_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGCTTTGCGCTTTGCTCCGGCAGCCATTYTGATCCCGCG GTGAGGGTGTACACTCCGAAGCGGCTGTTCCMCCAGCTGGAGGCGGCCAAGEST: gi|71430897|gb|DR811947.1|DR811947
genomic: CGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCG GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAGEST: gi|76281673|gb|DV021241.1|DV021241
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCG GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAGEST: gi|160481374|gb|EY254288.1|EY254288
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCG GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAGEST: gi|71761823|gb|DR959760.1|DR959760
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTTTGATCCCGCG GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
ctcacttcgctttgttttgttttaatttgttttggctgcgttgcaatgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAGGAGGAGTTCATCCGGGCGACGGCCGGCGTGTGGAAGGAGCAGAAGCTGC
ttttaat putative branch site (score: 3)
tttgttttgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgaccctcttttttctgaattctcaacgcagcagcatcaccatctcacttcgctttgttttgttttaatttgttttggctgcgttgcaatgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAGGAGGAGTTCATCCGGGCGACGGCCGGCGTGTGGAAGGAGCAGAAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC