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...tatcaaagtagtagagcttgtattgttgtacacgccttttaacagcagtacatactgagtattctgttacaatcctaattcatgttcttttaattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGCGCTGCAGGTACTGGGAGGCCATAGCCTGTCAGTAGATCCTGAATTCTA
species | Zea mays |
transcript | GRMZM2G050484_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTAGCAAAGGAGATAAGCTTGTAGCATCGEST: gi|88749903|gb|DY534044.1|DY534044
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|78115522|gb|DV533910.1|DV533910
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|18164662|gb|BM334501.1|BM334501
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|211350243|gb|FL472543.1|FL472543
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTAGCAAAGGAGATAAGCTTGTAGCATCGEST: gi|18178000|gb|BM379210.1|BM379210
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|71308419|gb|DR790442.1|DR790442
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|76288875|gb|DV028443.1|DV028443
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|50324963|gb|CO520089.1|CO520089
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|71300310|gb|DR786224.1|DR786224
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|71446246|gb|DR827296.1|DR827296
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGEST: gi|91052253|gb|EB162671.1|EB162671
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
EST: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAG CTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
genomic: AAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgat ... taattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCG
cagtacatactgagtattctgttacaatcctaattcatgttcttttaattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGCGCTGCAGGTACTGGGAGGCCATAGCCTGTCAGTAGATCCTGAATTCTA
tgttctttt CT-rich tract
atgttcttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcaaagtagtagagcttgtattgttgtacacgccttttaacagcagtacatactgagtattctgttacaatcctaattcatgttcttttaattgacagCTTGTACTTCTTGGAAGTCAGCTTACCAAAGGAGATAAGCTTGTAGCATCGCGCTGCAGGTACTGGGAGGCCATAGCCTGTCAGTAGATCCTGAATTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - -gagcttg
- - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - cacgcct
- - - - - - - - - - - - - - - - - - - - -acagcag
- - - - - - - - - - - - - - - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttac