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...gtgctactatgcgttggttctttttgctgtactctgaagttacacctgcctaccatcttcacaatgcatcaaacataacttgatttcttgcacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGCATCGAGTACAGATTCTGATGTGGAGAACAGGGCGCCTGGCATGAA
species | Zea mays |
transcript | GRMZM2G048435_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTT-AA- -AGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCEST: gi|89247868|gb|DY619654.1|DY619654
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... cacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTT-AA- -AGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCEST: gi|60350848|gb|DN217821.1|DN217821
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... cacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTT-AA- -AGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCEST: gi|60358610|gb|DN225583.1|DN225583
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... cacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG CAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCEST: gi|28985121|gb|BQ539390.2|BQ539390
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... cacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG CAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCEST: gi|113704299|gb|EE681803.1|EE681803
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... cacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG --G-CCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... cacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCC
ctgcctaccatcttcacaatgcatcaaacataacttgatttcttgcacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGCATCGAGTACAGATTCTGATGTGGAGAACAGGGCGCCTGGCATGAA
tttcttgcacctctt CT-rich tract
aaacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctactatgcgttggttctttttgctgtactctgaagttacacctgcctaccatcttcacaatgcatcaaacataacttgatttcttgcacctcttagCAGGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGCATCGAGTACAGATTCTGATGTGGAGAACAGGGCGCCTGGCATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
gtgctac
- - - - - - - tggttct
- - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - cacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttg