1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctactatgcgttggttctttttgctgtactctgaagttacacctgcctaccatcttcacaatgcatcaaacataacttgatttcttgcacctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGCATCGAGTACAGATTCTGATGTGGAGAACAGGGCGCCTGGCATGAATCA
species | Zea mays |
transcript | GRMZM2G048435_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGCAGEST: gi|28985121|gb|BQ539390.2|BQ539390
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTT-AA--AGgtaaactgca ... ctcttagc
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGCAGEST: gi|60350848|gb|DN217821.1|DN217821
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTT-AA--AGgtaaactgca ... ctcttagc
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG GCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGEST: gi|113704299|gb|EE681803.1|EE681803
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... ctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGG
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG GCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGEST: gi|89247868|gb|DY619654.1|DY619654
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... ctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGG
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG GCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGEST: gi|16926571|gb|BM079639.1|BM079639
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... ctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGG
EST: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAG GCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGG
genomic: TTTAGACAGTTGAAGCTTCCTGACTAGTTCCCTTCTAAAAGTAGTTAAAGgtaaactgca ... ctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGG
cctaccatcttcacaatgcatcaaacataacttgatttcttgcacctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGCATCGAGTACAGATTCTGATGTGGAGAACAGGGCGCCTGGCATGAATCA
tttcttgcacctctt CT-rich tract
aaacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactatgcgttggttctttttgctgtactctgaagttacacctgcctaccatcttcacaatgcatcaaacataacttgatttcttgcacctcttagcagGCCATTATAATTTCAGCATAGCTGCGTTTGGAGCCAACCGGAGTTGCCTGGCATCGAGTACAGATTCTGATGTGGAGAACAGGGCGCCTGGCATGAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - -tggttct
- - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - - -cacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgc