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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtactgacctcttatgcacgtacatttctatgaaatagttgttttttctcttcagttttcaacctatgcatttcattgtcgtagGCCCTGTCTGTCGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCT

Basic information

species Zea mays
transcript GRMZM2G048067_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 10
---------------gtctgtactgacctcttatgcacgtacatttctatgaa-atagttgttttttctctt---cagttttcaacctatgcatttcattgtcgtagGCCCTGTCTGTCGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCT
                ||||   || ||| || ||   ||| |  | ||  |   | ||||| | || ||||   |   ||||||  | || |  |  || |   ||||  |||| || || || || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
gtatggagttgaccgttctgcg-tgcccttttttgggggtagaactgtagaagtgttgttgtatattatcttacccgtatttcaaattctggaacttttttt---agGCTTTGTCCGTTGGCATCTTCCCTTATGTACTTAAACTGCTTCAAACAAGTGCAATGGAGTTGCGCCAAATTCTTGTGTTCATATGGACAAAAATTCTCT

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 11
---------------gtctgtactgacctcttatgcacgtacatttctatgaa-atagttgttttttctcttcagttttcaacctatgcatttcattgtcgtagGCCCTGTCTGTCGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCT
                ||||   || ||| || ||   ||| |  | ||  |   | || || | || ||||     |    || || |      || |  |||||  |||| || || || || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
gtatggagttgaccgttctgcg-tgcccttttttgggggtagaactgtagaagtgttgtcgtatattatcttactcgtatttccaattctggaactttttttagGCTTTGTCCGTTGGCATCTTCCCTTATGTACTTAAACTGCTTCAAACAAGTGCAATGGAGTTGCGCCAAATTCTTGTGTTCATATGGACAAAAATTCTCT

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 11
lower sequence: PP1S26_271V6.1 (Physcomitrella patens), 3'ss of exon 11
------------------------------------------------------------------------------------------------------gtctgtactgacctcttatgcacgtacatttctatgaaatagttgttttttctcttcagttttcaacctatgcatttcattgtcgtagGCCCTGTCTGTCGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCT
                                                                                                       | ||  |  |   ||||     | | |   |  |    |   ||| |  |   |  ||| ||     | | | |||  || |   ||||  ||||||| |||||||| || ||||| || || ||||| ||| |||  || |  || ||||| ||||||||||| |||||||||||||| |||||  
gtaactatcatctccttgtcagttcttattcagagctttgcccctgttgtatcgctcggttagtgtgaacctttcagtaagaagatatgtgaaacaatatatatttggtcgcaatccttacttgggcagaacaccttctgttttgtgtctcattaatgaagtattg----tgtacttttgtttttaccagGCTTTGTCTGTAGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaatagttgttttttctcttcagttttcaacctatgcatttcattgtcgtagGCCCTGTCTGTCGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCT
                                         tttcatt  CT-rich tract
         ttgtttttt  TA-rich tract