1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaccactggcgatgatctacattttatcagtttatcaattataatgctgtagcatgtaatttccatttttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATTTGATCAATTTGCATATCTATATGAAGACCATATATGCTGCAAGGTGGAT
species | Zea mays |
transcript | GRMZM2G047695_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAG ATTGCATGTTTTCTTTTCCCAGATGGTCATACCATAAAGAATGTCAAAATTEST: gi|211474398|gb|FL070287.1|FL070287
genomic: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAGgtaccactgg ... tttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATT
EST: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAG ATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATTEST: gi|149064130|gb|EE286426.2|EE286426
genomic: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAGgtaccactgg ... tttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATT
EST: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAG ATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATTEST: gi|211474397|gb|FL070286.1|FL070286
genomic: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAGgtaccactgg ... tttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATT
EST: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAG ATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATT
genomic: CCACACAGTGTCACCTTGCCCTGCTCCATATGCCCCTGAATTGAAATGAGgtaccactgg ... tttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATT
tttatcagtttatcaattataatgctgtagcatgtaatttccatttttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATTTGATCAATTTGCATATCTATATGAAGACCATATATGCTGCAAGGTGGAT
tttccatttttct CT-rich tract
agtttatcaattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccactggcgatgatctacattttatcagtttatcaattataatgctgtagcatgtaatttccatttttctggcagATTGCATGTTTTCTTTTCCCAGATGGTCATACCATTAAGAATGTCAAAATTTGATCAATTTGCATATCTATATGAAGACCATATATGCTGCAAGGTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA