1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cccaacctggaattttatttcaagagagttccatgtcaagccacagtgcaatttttcatctggttgcctgatataatcctcatgcaatttttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATATGTGATACTTATCGTAGTGCTATGTGGCGTAGTGTGGAAAATATTTAA
species | Zea mays |
transcript | GRMZM2G047431_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAG ACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATEST: gi|8551599|gb|BE128944.1|BE128944
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
EST: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAG ACTGTTGATCTCAGCGTGGATTTAAGCGCTGCTAGTGCTGCTGAAGATGATEST: gi|211044538|gb|FL475091.1|FL475091
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
EST: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAG ACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATEST: gi|211200480|gb|FL442520.1|FL442520
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
EST: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAG ACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATEST: gi|4804534|gb|AI665406.2|AI665406
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
EST: AGTCCCCTGTTATGGATGTACTTTCCCTTTACACAAAGATCCCCGGAAAG ACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATEST: gi|211340571|gb|FL245012.1|FL245012
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
EST: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAG ACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATEST: gi|17921693|gb|BM259344.1|BM259344
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
EST: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAG ACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
genomic: AGTCCACTGTTATGGATGTACTTTCCCTTTACACAAAGATCACCGGAAAGgtacatatat ... ttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGAT
gtgcaatttttcatctggttgcctgatataatcctcatgcaatttttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATATGTGATACTTATCGTAGTGCTATGTGGCGTAGTGTGGAAAATATTTAA
gcctgat putative branch site (score: 110)
caatttttcttttc putative PPT
aatttttcttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaacctggaattttatttcaagagagttccatgtcaagccacagtgcaatttttcatctggttgcctgatataatcctcatgcaatttttcttttcagACTGTTGATCTCAGCGTGGATCTAAGCGCTGCTAGTGCTGCTGAAGATGATATGTGATACTTATCGTAGTGCTATGTGGCGTAGTGTGGAAAATATTTAA
- - acctgga
- - - - - - - - - - - - - - - ccatgtc
- - - - - - - - - - - - - - - - - - - - - -cagtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca