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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaattattagggtgtgcaagatatcatttttatgcaatgggtgccgtcatgatatttttgctatcctgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG

Basic information

species Zea mays
transcript GRMZM2G045241_T07
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T05 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os03g63020.4 (Oryza sativa), 3'ss of exon 11
gtgagaaattattagggtg-tgcaagatatcattttta--------tgcaatgggtgccgtcatgatatttttgctatcctgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
||||||  ||||| |  ||  |   ||    || |||         || ||||||||   || |||  ||   |||||| |  | ||||||||||||| |||||||| |||||||| ||| | |||||| |||| |
gtgagattttatttgcatgacgtgggaacatatatttgcatgagagtggaatgggtgttatcctgaagttc--gctatcatatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76294030|gb|DV033598.1|DV033598
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|47961462|gb|CN844171.1|CN844171
EST:     CGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: CGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|78081455|gb|DV509867.1|DV509867
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|211252583|gb|FL430692.1|FL430692
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|76908596|gb|DV163020.1|DV163020
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|211489896|gb|FL473954.1|FL473954
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|15080211|gb|BI388982.1|BI388982
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|211489897|gb|FL473955.1|FL473955
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|78117446|gb|DV535833.1|DV535833
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
EST: gi|211260967|gb|FL474891.1|FL474891
EST:     ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAG                         GAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
genomic: ACCTTGGTAAGCATGTTCCACGACGTACAGAAGAGgtgagaaatt ... tgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatttttatgcaatgggtgccgtcatgatatttttgctatcctgacgtgcagGAAATTCTCCTGTACCCGGGATTTGAGAATACCCCTGTGAAGTCCG
                                          tcctgac  putative branch site (score: 2)
                                       ctatcct  CT-rich tract
                           atgatattttt  TA-rich tract