1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGCCTGAAGCTTGAACAGTTTATATTCGACGCCTTCACATACTCCCCGTCC
species | Zea mays |
transcript | GRMZM2G044629_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT ATCCCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGEST: gi|149100895|gb|EE186990.2|EE186990
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGEST: gi|78115802|gb|DV534190.1|DV534190
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: GGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGEST: gi|71429873|gb|DR810923.1|DR810923
genomic: GGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGEST: gi|211119105|gb|FL479440.1|FL479440
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: ACTYTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGMCAGTGT ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGEST: gi|211094109|gb|FL460556.1|FL460556
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT ATACCATCTAGCTGAGAAGAAGATCCCTCCCATCCATGGGTTCACGACGGGEST: gi|71772484|gb|DR970416.1|DR970416
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
caaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGCCTGAAGCTTGAACAGTTTATATTCGACGCCTTCACATACTCCCCGTCC
gcctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGGCCTGAAGCTTGAACAGTTTATATTCGACGCCTTCACATACTCCCCGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC